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Natural Science Forum / Biology / Biology / January 2008



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Homologous Pairs--What Are They?

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W. Watson - 03 Jan 2008 03:49 GMT
I've looked at two very introductory books on genetics (cartoons and
dummies). They have good figures showing pairs of chromosomes, but don't
accurately pin down the idea in my view.

For example, in Genetics for Dummies, there's a figure (2.3) showing two
chromatids side by side unconnected. A pair. One chromatid has an A allele
and the other A. Is this the homologous pair? (I think it is.) To the right
are shown a pair (call them 1 and 2 that look like an X) of, attached at the
centromere, chromatids. No 1 shows an A in each chromatid, and no. 2 shows
an a in each chromatid. Are these the homologous pair?

I'd vote for the first arrangement, as remarked above. My guess is that the
first arrangement is what is found in the nucleus prior to meiosis, and the
second (1 and 2) is once meiosis has begun.

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                         Wayne Watson (Nevada City, CA)

                       Web Page: <speckledwithStars.net>

Bob - 03 Jan 2008 05:05 GMT
>I've looked at two very introductory books on genetics (cartoons and
>dummies). They have good figures showing pairs of chromosomes, but don't
[quoted text clipped - 3 lines]
>chromatids side by side unconnected. A pair. One chromatid has an A allele
>and the other A. Is this the homologous pair? (I think it is.)

yes (Did you mean A and a?? If not, then I'm confused.)

>To the right
>are shown a pair (call them 1 and 2 that look like an X) of, attached at the
>centromere, chromatids. No 1 shows an A in each chromatid, and no. 2 shows
>an a in each chromatid. Are these the homologous pair?

yes -- #1 and #2 are a homologous pair.

The X-shaped #1 is one of the chromosomes you had above, but now
replicated (and still attached at the centromere).

If I understand your description, both show a homologous pair --
unreplicated in one case, replicated in the other.

You have two sets of chromosomes, one from mom and one from dad. For
chromosome #1, you have two copies, one from mom and one from dad.
They are a homologous pair -- two copies of chromosome #1 (carrying
the same genes, though not necessarily the same alleles of those
genes).

>I'd vote for the first arrangement, as remarked above. My guess is that the
>first arrangement is what is found in the nucleus prior to meiosis, and the
>second (1 and 2) is once meiosis has begun.

yes, but they are homologous pair at any stage.

bob
W. Watson - 03 Jan 2008 11:24 GMT
See below.

>> I've looked at two very introductory books on genetics (cartoons and
>> dummies). They have good figures showing pairs of chromosomes, but don't
[quoted text clipped - 5 lines]
>
> yes (Did you mean A and a?? If not, then I'm confused.)
Yes, A and a.

>> To the right
>> are shown a pair (call them 1 and 2 that look like an X) of, attached at the
[quoted text clipped - 22 lines]
>
> bob

Maybe homologous is more general than I think. It seems OK to refer to an
unbound male and female chromatid for the same chromosome as homologous, and
 in the case when they are crossed (bound). I think my confusion is that I
was not accounting for sex.

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                         Wayne Watson (Nevada City, CA)

                       Web Page: <speckledwithStars.net>

bae@cs.toronto.no-uce.edu - 04 Jan 2008 02:14 GMT
>Maybe homologous is more general than I think. It seems OK to refer to an
>unbound male and female chromatid for the same chromosome as homologous, and
>  in the case when they are crossed (bound). I think my confusion is that I
>was not accounting for sex.

You'll only confuse yourself if you think of the chromosomes having
sex or gender.  In a diploid organism, one chromosome of each pair
comes from each parent, but this applies to organisms that don't have
males and females too, e.g. hermaphroditic animals (many invertebrates),
plants, fungi, yeast, protozoa, etc.

An analogy that might help you think about this is to imagine shuffling
together two decks of cards, one with red backs and one with blue backs.
the resulting double deck has 104 cards, and for each kind of card, e.g.
the king of diamonds, there are 2 examples, one with a blue back and one
with a red back.  These pairs can be thought of as like homologous
chromosomes in an organism with a haploid number of 52 and a diploid
number of 104.

As for the "bound" stuff, I think you are confusing homologous
chromosomes with ones that are doubling themsleves in mitosis.  To
strain the card deck analogy above, if this "diploid deck" were to
undergo mitosis, each card would duplicate itself, and after mitosis
completes, each of the two resulting cells has an identical set of
104 chromosomes.  At the stage when the two chromatids are 'bound',
you would have each card doubled, but the two copies are sort of
pinned together.  So there would be two copies of e.g. the blue back
5 of clubs pinned together, and also two copies of the red back
5 of clubs separately pinned together.  Later in the process, they
are 'unpinned' and each of the two resulting cells gets a copy of
each 'card' or chromosome.  Ideally they are identical genetically
to the original cell.

In meiosis, the homologous chromosomes find each other, and undergo
crossing over, mixing the contributions from the two parents to make
haploid gametes for the next generation.  That's why your children
will have genetic material from all four of their grandparents, and if
they aren't identical twins, they will each have a unique mix of traits.
If you wanted to use the card deck analogy for meiosis, you'd have to
use scissors and tape.

I hope this helps.
r norman - 03 Jan 2008 05:10 GMT
>I've looked at two very introductory books on genetics (cartoons and
>dummies). They have good figures showing pairs of chromosomes, but don't
[quoted text clipped - 10 lines]
>first arrangement is what is found in the nucleus prior to meiosis, and the
>second (1 and 2) is once meiosis has begun.

People are  diploid, we have two sets of chromosomes; one from the
mother and one from the father.  The two corresponding chromosomes are
called homologous.  They have the same genes, but what the genes "say"
(what alleles they contain) can be different.  So if the gene for "big
nose" is on that chromosome (my favorite joke example of a gene --
there really isn't one specific gene for that trait), one of the two
homologs can say "make a big nose" but the other can say "make a small
nose".  The technical term would be that you are heterozygous for that
trait, the two alleles are different.

As a separate story, when the chromosomes first become visible in
mitosis, the DNA is already replicated in preparation for cell
division so that each chromosome is made of two chromatids, also
called "sister' chromatids, still joined together at the centromere.
If the centromere is sort of near the middle of the chromosome, the
two sisters make the chromosome have a sort of X shape.  Later in
mitosis, the sister chromatids separate so that each  chromosome is
made out of a single chromatid instead of out of a pair of sisters.
The sisters are identical (except for mutation) because they are the
copies made when the DNA replicates.  Remember, the homologs are often
NOT identical because they have different DNA.

In your picture, sister chromatids always have the SAME allele, both
either A or both a.  Homologous chromosomes CAN be different so that
one homolog can be A and the other a.  So you are right: "1" and "2"
form a homologous pair but the left side of the picture shows sister
chromatids.

Yes, it is very  confusing.  Once you catch on it seems very simple
but until then you can get completely lost.
W. Watson - 03 Jan 2008 11:44 GMT
Thanks. I think I'm catching on. You're right, the "big nose" approach is
funny, and helpful. The cartoon book (Cartoon Guide to Genetics) introduced
the homologous idea via pictures without much attention to specific
attention the alleles. It left me hanging. Just looking at the cartoon gave
me too many choices for possibilities, and sometimes the drawings don't
carefully reveal male (dark coloring, I think) vs female (light). I could
just see too many pairs in figures similar to 2.3. Sometimes a picture is
not worth 1000 words.

It sure is interesting how all this works, and how anyone figured it out. I
peeked ahead in Dummies and noticed a kitchen demo to produce DNA . Too bad
there aren't a few more such kitchen demos in the book. (There may be, but
my cursory examination didn't reveal any.)

>> I've looked at two very introductory books on genetics (cartoons and
>> dummies). They have good figures showing pairs of chromosomes, but don't
[quoted text clipped - 41 lines]
> Yes, it is very  confusing.  Once you catch on it seems very simple
> but until then you can get completely lost.

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                         Wayne Watson (Nevada City, CA)

                       Web Page: <speckledwithStars.net>

 
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