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Natural Science Forum / Biology / Biology / June 2008



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Life?

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NTuser_Man@msn.com - 27 May 2008 17:19 GMT
So, a living body is alive and most of the parts of the body are
alive
(limbs, organs but not fur, scales, feathers, claws?). The cells of
the
body are alive, since one celled animals are alive. But are the parts
of the cell (the membrane, the plasma, nucleus, DNA ribosomes,
Golgi body, mitochondria) alive?

If those things are not alive how can the cell be alive?
NTuser_Man@msn.com - 28 May 2008 03:21 GMT
On May 27, 11:19 am, NTuser_...@msn.com wrote:
> So, a living body is alive and most of the parts of the body are
> alive
[quoted text clipped - 5 lines]
>
> If those things are not alive how can the cell be alive?

Is the question too complex? Too subtle?
r norman - 28 May 2008 03:43 GMT
>On May 27, 11:19 am, NTuser_...@msn.com wrote:
>> So, a living body is alive and most of the parts of the body are
[quoted text clipped - 8 lines]
>
>Is the question too complex? Too subtle?

The question is simply too naive.

How can an atom be hydrogen when it is made of a proton and an
electron, neither of which are hydrogen?

How can table salt be composed of two elements each one highly
reactive and toxic?

How can water, a liquid at room temperature and pressure, be composed
of two elements each one a gas at room temperature and pressure?

How can a question be composed of words none of which are a question?

How can a word have meaning when it is made of letters none of which
have meaning?

Shall I go on?
NTuser_Man@msn.com - 28 May 2008 12:57 GMT
> >On May 27, 11:19 am, NTuser_...@msn.com wrote:
> >> So, a living body is alive and most of the parts of the body are
[quoted text clipped - 26 lines]
>
> Shall I go on?

Please do, if you can refrain from further personal insults and
discuss
in a civil matter. I am not fishing for a troll, as you appear to be.

I am asking a serious question, not playing with definitions.
Bob - 28 May 2008 04:24 GMT
>So, a living body is alive and most of the parts of the body are
>alive
[quoted text clipped - 3 lines]
>of the cell (the membrane, the plasma, nucleus, DNA ribosomes,
>Golgi body, mitochondria) alive?

no. You have not offered your criterion for being alive, but "no"
seems likely here.

>If those things are not alive how can the cell be alive?

A brick is not a house. But you can make a house out of bricks.

Same idea.

Read about "emergent" properties.

bob
NTuser_Man@msn.com - 28 May 2008 13:21 GMT
> >So, a living body is alive and most of the parts of the body are
> >alive
[quoted text clipped - 16 lines]
>
> bob

Calling on emergent properties refutes the reductionist
position, but that is not a response to my question. My
question obviates reductionism by inquiring how it is
that the whole has a nature apparently not understood
simply with reference to its parts.

One might object that the question is complex and
make a case for reductionism but I do not think anyone
actually holds that position with regard to life, so I do
not think reductionism needs to be addressed. I could
be wrong in this matter.

I did not offer a criterion for life for fur, scales, feathers,
and claws, but I do not believe anyone regards these
things as alive. I could be wrong on the matter, are
these things alive rather than inert organic matter? Is
their status disputed so that there an actual need?

If I had a criterion for being alive I would not pose the
question. Some things we judge to be alive, such as
animals or plants, and we judge many of the
components of those things to be alive, down to the
individual cells. But are the parts of the cell (the
membrane, the plasma, nucleus, DNA ribosomes,
Golgi body, mitochondria) alive? I do not think all of
them are. What makes the difference?

Suppose we call life an emergent or supervenient
property. What additional understanding does that
label impart, other than a refutation of reductionism?
r norman - 28 May 2008 14:22 GMT
>> >So, a living body is alive and most of the parts of the body are
>> >alive
[quoted text clipped - 47 lines]
>property. What additional understanding does that
>label impart, other than a refutation of reductionism?

Your position is simply silly.  You don't have to be an emergentist to
understand that a system with its complex of interactions between the
parts does things differently that are not possible by the separate
parts.  A negative feedback thermostat regulates but the separate
parts don't.   An atom has discrete energy levels where the separate
nucleus and electrons do not.  Any process produced by the interaction
between two components 'supervenes' or 'emerges' from the parts.
Reductionism argues that you can predict the behavior or the total
system knowing the properties of the parts including how they
interact.  That form of reductionism is not at all refuted by seeing
new behavior arise from the interaction.
NTuser_Man@msn.com - 29 May 2008 01:31 GMT
> >> >So, a living body is alive and most of the parts of the body are
> >> >alive
[quoted text clipped - 59 lines]
> interact.  That form of reductionism is not at all refuted by seeing
> new behavior arise from the interaction.

Are you capable of carrying out a discussion sans ad hominem?

Emergent properties arise out of of more fundamental components
but are not reducible to more fundamental components. Those are
controversial. That a complex system can exhibit predictable
properties not themselves exhibited by component parts is not
controversial. I never said otherwise, and in fact you provide a
number of trivial examples. Trivial because a vocabulary is already
in place such that we could define the example object (an atom, a
thermostat) a house in terms of component parts. Such properties
are not emergent properties.

Calling life an emergent property may not very helpful. Appeal to
emergent property, if that is the end of the discussion, seems to
me sort of like putting a label on a mystery. It does not help
understand how we know that, when analyzing a living body, after
a certain point we know that we are are dealing with non living
organic matter.

"A brick is not a house. But you can make a house out of bricks"
A vocabulary exists such that we could define an object such as
a house in terms of component parts. I could be wrong, but I do
not think a vocabulary exists such that we can actually define a
living organism in terms of its component parts.
r norman - 29 May 2008 01:42 GMT
>> >> >So, a living body is alive and most of the parts of the body are
>> >> >alive
[quoted text clipped - 84 lines]
>not think a vocabulary exists such that we can actually define a
>living organism in terms of its component parts.

If you read what I said, it is the interaction between the component
parts that produces the emergent behavior.  The separate parts do not
show that behavior because they lack such interaction.  If you put the
parts together, the dynamics of the ensemble changes dramatically; you
get whole new behaviors, new "basins of attraction" if you will.  Life
is simply the ensemble of reactions within a cell that constitutes a
dynamic system "basin of interaction".  The separate components do not
exhibit such behavior.  Whether that emergence is predictable depends
on how prescient we are in our imagination in putting together the
components and analyzing exactly how they interact.
NTuser_Man@msn.com - 02 Jun 2008 04:17 GMT
> >> >> >So, a living body is alive and most of the parts of the body are
> >> >> >alive
[quoted text clipped - 97 lines]
>
> - Show quoted text -
NTuser_Man@msn.com - 02 Jun 2008 04:43 GMT
> >> >> >So, a living body is alive and most of the parts of the body are
> >> >> >alive
[quoted text clipped - 97 lines]
>
> - Show quoted text -

What you wrote was "Any process produced by the interaction between
two components 'supervenes' or 'emerges' from the parts", which, as
formulated is a dubious claim and that was what I was responding to.
But it really does not matter whether you go the emergent route or the
reductionist route, or if you try to be ambiguous by appealing to
prescience and imagination.

That components interacting effect properties that the components do
not exhibit separately is not controversial. Suppose we call the
result a "basin of attraction". That still seems like only a label.
Many processes produce new "basins of attraction" without that basin
being life.
Bob - 29 May 2008 05:17 GMT
>> >So, a living body is alive and most of the parts of the body are
>> >alive
[quoted text clipped - 30 lines]
>
>I did not offer a criterion for life

That's fine. A "common sense" understanding of "life" is probably fine
here -- at least until something comes up that suggests we are not
agreeing on it.

But the rest of what you wrote is quite mystifying. If you think
someone has refuted reductionism, you better define that. Seems to me
you have just attacked a straw man.

Two of us have offered examples of how it is common that complex
systems have properties not easily predicted from the parts. Do you
understand those examples? Do you agree, then, that the situation you
offer is not really any different -- just a different example?

Your original message sounded like a "simple" question, whether naive
or profound, we can't tell. Now, you seem to want an argument. What it
is you want to argue about is not clear. Arguing terminology is not
fruitful. So maybe you can explain what your concern is. If you have
some special perspective that is relevant, maybe clue us in. (I have a
background in chemistry and biology. With that perspective, I don't
see any big deal here in the properties of life.)

Just for fun... See the Wikipedia article on nanobacteria, especially
the papers listed for 2008. The key conclusion is that the purported
nanobacteria are not alive, but are some kind of unusual crystal
formation process, in part involving organic material. I could not
help but think as I read those papers how such a system could "easily"
evolve into a  life form. A fun idea.

bob
SuvarZz@gmail.com - 01 Jun 2008 15:32 GMT
the cell is a unit of life. And ribosome and Golgi apparatus can't be
alive.
NTuser_Man@msn.com - 02 Jun 2008 05:32 GMT
On Jun 1, 9:32 am, Suva...@gmail.com wrote:
> the cell is a unit of life. And ribosome and Golgi apparatus can't be
> alive.

Suppose we take it as read that the ribosome and Golgi apparatus are
not alive, yet the cell is. Suppose we further take it as read that
the cell is observed to be the basic unit of life. The question
remains, why is it the case that the ribosome and Golgi apparatus are
not alive?
NTuser_Man@msn.com - 02 Jun 2008 05:27 GMT
> >> >So, a living body is alive and most of the parts of the body are
> >> >alive
[quoted text clipped - 38 lines]
> someone has refuted reductionism, you better define that. Seems to me
> you have just attacked a straw man.

If life really is an emergent property then a reductionist position on
the matter of how a living organism arises from simpler matter is not
on. You suggested that life is an emergent property, I am not
sympathetic to a reductionist account of the matter and I do not think
anyone actually wants to defend it, so in the context of the
discussion reductionism on the matter is refuted, obviated. There is
no need to do the actual work refuting a position taken by no
participant in a discussion.

The notion of emergent properties is also a difficult one if
challenged, one could spend as many gallons of ink defending emergent
properties as one could if one were to work up a reductive account in
non question begging language. I recall a long discussion on the
matter that seemed to hinge on whether ever physical event had a
physical cause, a claim which itself can be the source of endless
diversion

Either way I do not thing that excursion is helpful.

I am not making some sweeping claim that reductionism on all matters
everywhere is refuted. That would be such a bizarre claim that I would
never consider that anyone read it in to my post.

> Two of us have offered examples of how it is common that complex
> systems have properties not easily predicted from the parts. Do you
> understand those examples? Do you agree, then, that the situation you
> offer is not really any different -- just a different example?

I am not disputing that some things are alive or that complex systems
have properties not easily predicted from the parts.

> Your original message sounded like a "simple" question, whether naive
> or profound, we can't tell. Now, you seem to want an argument. What it
[quoted text clipped - 10 lines]
> help but think as I read those papers how such a system could "easily"
> evolve into a  life form. A fun idea.

I am not making some sweeping claim that reductionism on all matters
everywhere is refuted. That would be such a bizarre claim that I would
never consider that anyone read it in to my post.

What would be relevant is why the nanobacteria are not alive. Simply
saying that a complex system can have properties not easily predicted
from the parts does nothing to say how the cell is alive. If would be
interesting if it turns out that the nanobacteria are very similar to
"conventional" bacterium in function and behavior, yet is not alive.
 
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