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Natural Science Forum / Biology / Paleontology / April 2008



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Breeding more Dinosaur-like Chickens feasible in mid-term?

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Dr Mephesto - 20 Feb 2008 14:59 GMT
Hi,

I am interested in opinions of a project I have in mind involving
evolutionary development.

As birds are more or less dinosaurs, more precisely decended from
theropod dinosaurs and in the microraptor group, and that it is now
knows that so-called junk DNA actually contains deactivated ancestoral
genes and regulatory elements ( see:
http://www.sciam.com/article.cfm?articleID=000E9965-99A6-13FB-99A683414B7F0000
and http://article.gmane.org/gmane.music.dadl.ot/38988 for examples of
teeth and tail research in birds; sorry for the lack of links directly
to the journal articles), one can assume that in the mid-term, modern
molecular biology may elucidate and activate some of these genes.
Aside from being a compelling piece of evidence for evolution (well
needed in some parts of the world right now!), this would help us
understand developmental embyology, give greater insights into the
mechanisms of evolution, and most importantly, be insanely cool.

With scientist currently working of the molecular biological
techniques required to 1) halt the loss and fusion of the 15-17
vertebrae visible in the embryo into the Pygostyle (bird version of
the coccyx) to from a tail, 2) induce the development of teeth, and 3)
reengineer the wings into clawed appendages. All three of these
projects seem to be making good progress, and all involve minimal
changes in the DNA the subject organism, the domesticated chicken
Gallus gallus.

The chicken is the best possible organism to use in the proposed
project; it is easily available in a wide variety of breeds, its eggs
are applicable to many standard scientific methods in embryology, any
techniques discussed in the previous paragraph could be immediately
applied, and most importantly, it is one of the handful of organisms
with a fully sequenced genome.

So, I propose to in parallel to the scientific research currently
underway, a seperate project is undertaken to breed in raptor-like
characteristics in domesticated chickens, that can be latter combined
with the already mentioned scientific techniques to generate a
dinosaur-like phenotype. My suggestion would be to 1) breed back the
chest musculature and pectoral girdle, and aim to breed forward the
shoulder blades to a more primative raptor form. 2) aim to breed up
the leg scales to cover the entire body (the reverse has already been
done, the the naked neck chicken breed to be completely featherless,
see: http://www.newscientist.com/article/dn2307-featherless-chicken-creates-a-flap.html).
Further breeding aims may include breeding to a more raptor like
pelvis, and for head morphology, however, this will probably only be
possible after the development of the tail and teeth reseach, as these
change will most probable affect the shape of the head and the animals
balance, so premature breeding will be wasted.

So, sorry for the long post, but I hope you found it interesting!
please post any comments suggestions or advice!

D.
John Harshman - 21 Feb 2008 00:57 GMT
> Hi,
>
[quoted text clipped - 14 lines]
> understand developmental embyology, give greater insights into the
> mechanisms of evolution, and most importantly, be insanely cool.

No. You mistake the nature of the experiments you cite. These are not
the reactivation of long-dormant genes. If there were any long-dormant
genes, they would long ago have mutated out of recognition because
selection wouldn't have conserved them, there being no selection on
dormant genes. Instead, these were genes that still have functions in
living chickens, but are activated at different times and/or different
places than in their ancestors. If you activate them in the ancestral
times/places, you get ancestral morphologies. There are no fossil genes
in the chicken.

> With scientist currently working of the molecular biological
> techniques required to 1) halt the loss and fusion of the 15-17
[quoted text clipped - 27 lines]
> change will most probable affect the shape of the head and the animals
> balance, so premature breeding will be wasted.

Parts of this might actually be feasible. Though you would get merely a
simulation of an extinct raptor, not a real raptor nor any real raptor
genome. You'd just have a weird-looking chicken that resembled a
primitive theropod.

Note, however, that a scaled body would not be accurate, since the
theropods you are trying to simulate were feathered.

> So, sorry for the long post, but I hope you found it interesting!
> please post any comments suggestions or advice!
>
> D.
Dr Mephesto - 21 Feb 2008 09:29 GMT
Thanks for the thought out reply!

just a couple of comments:

> No. You mistake the nature of the experiments you cite. These are not
> the reactivation of long-dormant genes. If there were any long-dormant
[quoted text clipped - 5 lines]
> times/places, you get ancestral morphologies. There are no fossil genes
> in the chicken.

While its true that the project I mentioned themselves are not aimed
at the recovery of long dormant genes, they aim to simulate their
function; for example, there must have been a regulatory element to
activate the growth of the embryonic tail, something that is now
missing in modern birds. Also, there are ways to recreate long dormant
genes; such as inference from multiple decendants of the target
organism (http://icb.oxfordjournals.org/cgi/content/abstract/
43/4/500), and there is no reason to think that this approach might
not also be applicable to control elements, although theres aren't to
many theropod decendants left to analyse! Also, although very
unlikely, there is the possibilty that fragment of dinosaur dna might
be recovered inside dinosaur bones, although the chance that this is
discovered, and that it contains that required genes and control
elements is vanishingly small.  But either way, that purpose of the
project is to create a dinosaur-like chicken, not to do the
impossible.

> Parts of this might actually be feasible. Though you would get merely a
> simulation of an extinct raptor, not a real raptor nor any real raptor
[quoted text clipped - 3 lines]
> Note, however, that a scaled body would not be accurate, since the
> theropods you are trying to simulate were feathered.

As mentioned above, and in the title, the project is to create a
simulation! A dinosaur-like chicken. And although you suggest weird
looking, I might suggest awesome looking.  Of course you are right
about the feathers, I believe the current opinion is that t-rex had
feathers as an adolescent; I just think scales are cooler :)

Does anyone have even a vague idea on how many generation of selective
breeding it would take to accomplish this kind of project? I am
refering to the wing and shoulder relocation and feather replacement?
And if not scales, does anyone have a good reference to the morphology
of raptor feathers?
John Harshman - 21 Feb 2008 15:13 GMT
> Thanks for the thought out reply!
>
[quoted text clipped - 15 lines]
> activate the growth of the embryonic tail, something that is now
> missing in modern birds.

Yes, but you apparently misunderstand what a regulatory element is. It's
not a gene. It's what is called a transcription factor binding site.
These are short segmenets of DNA, usually in the upstream promoter
region of a gene, that are easily gained and lost through a small number
of mutations. They aren't dormant; they are either present or not
present. Might I suggest you read a fine book by Sean Carroll, Endless
Forms Most Beautiful? That will give you a grounding.

> Also, there are ways to recreate long dormant
> genes; such as inference from multiple decendants of the target
> organism (http://icb.oxfordjournals.org/cgi/content/abstract/
> 43/4/500),

No, not long-dormant genes. Ancestral genes, yes. But genes dormant that
long would tend to be lost entirely or to have no remaining information
about the ancestral state. You are right that if the gene had been
deactivated recently enough we could recover a probable ancestor.

At any rate, none of the evolution you are talking about is likely to
involve dormant genes anyway, and so the idea is not relevant.

> and there is no reason to think that this approach might
> not also be applicable to control elements,

Yes there is. Because they are so short, their information is more
likely to be entirely deleted.

> although theres aren't to
> many theropod decendants left to analyse!

Well, there are 10,000 or so, but they all descend from a single
ancestor that had lost the functions you are interested in already. So,
yes, that's another thing that makes reconstruction impossible.

> Also, although very
> unlikely, there is the possibilty that fragment of dinosaur dna might
[quoted text clipped - 3 lines]
> project is to create a dinosaur-like chicken, not to do the
> impossible.

And certainly that would be possible.

>> Parts of this might actually be feasible. Though you would get merely a
>> simulation of an extinct raptor, not a real raptor nor any real raptor
[quoted text clipped - 13 lines]
> breeding it would take to accomplish this kind of project? I am
> refering to the wing and shoulder relocation and feather replacement?

Selective breeding is going to take a very long time, and you might
never get there at all. Genetic engineering is your best bet.

> And if not scales, does anyone have a good reference to the morphology
> of raptor feathers?

Sure. Different feathers had different morphologies. Just consult the
primary literature for the original descriptions of the species
involved. Here are a few:

Ji, Q., P. J. Currie, M. A. Norell, and S.-A. Ji. 1998. Two feathered
dinosaurs from northeastern China. Nature 393:753-761.

Ji, Q., M. A. Norell, K.-Q. Gao, S.-A. Ji, and D. Ren. 2001. The
distribution of integumentary structures in a feathered dinosaur. Nature
410:1084-1088.

Xu, X. 2000. The smallest known non-avian theropod dinosaur. Nature
408:705-708.

Xu, X., X.-L. Wang, and X.-C. Wu. 1999. A dromaeosaurid dinosaur with a
filamentous integument from the Yixian Formation of China. Nature
401:262-266.

Xu, X., Z. Zhou, X. Wang, X. Kuang, F. Zhang, and X. Du. 2003.
Four-winged dinosaurs from China. Nature 421:335-340.
Dwight E. Howell - 12 Apr 2008 17:17 GMT
> Thanks for the thought out reply!
>
[quoted text clipped - 46 lines]
> And if not scales, does anyone have a good reference to the morphology
> of raptor feathers?

They have just reported in the news that feathers from  very early birds
or near birds have been found in amber. Personally I'd stick to arms and
tails with a beak on a more bird like animal about the size of chicken
for people to use as pets. I don't want it eating the dogs or the kids.
 
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