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Natural Science Forum / Biology / Paleontology / February 2007



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Article: Prehistoric origins of stomach ulcers uncovered

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Robert Karl Stonjek - 08 Feb 2007 07:17 GMT
Prehistoric origins of stomach ulcers uncovered
An international team of scientists has discovered that the ubiquitous bacteria that causes most painful stomach ulcers has been present in the human digestive system since modern man migrated from Africa over 60,000 years ago. The research, published online today (7 February) by the journal Nature, not only furthers our understanding of a disease causing bacteria but also offers a new way to study the migration and diversification of early humans.

The international research collaboration was led by scientists from the University of Cambridge, the Max Planck Institute in Berlin, and the Hanover Medical School. The researchers compared DNA sequence patterns of humans and the Helicobacter pylori bacteria now known to cause most stomach ulcers. They found that the genetic differences between human populations that arose as they dispersed from Eastern Africa over thousands of years are mirrored in H. pylori.

Human DNA analysis has shown that along the major land routes out of Africa human populations become genetically isolated - the further from Eastern Africa a population is the more different genetically it is compared to other human populations. Other research has shown gradual differences in European populations, presumed to be the result of Neolithic farmers moving northwards. The international H. pylori research team found almost exactly the same genetic distribution patterns in their results.

The scientists combined their genetic analysis with a computer simulation the modelled the spread of the bacteria across the globe. This showed that it migrated from Eastern Africa at almost exactly the same time as early humans, approximately 60,000 years ago.

The UK research effort was led by Dr Francois Balloux, a Biotechnology and Biological Sciences Research Council-funded scientist at the University of Cambridge. He said: "Humans and this ulcer-causing bacterium have been intimately linked for the last 60,000 years. The research not only shows the likelihood that for tens of thousands of years our ancestors have been suffering the effects of this bacteria but it also opens up new possibilities for understanding early human migration. By showing that Helicobacter pylori emerged from Africa at the same time as early humans it makes it easier to examine some of the controversial questions about human migration. For example we could use our understanding of the bacteria's spread to gauge poorly understood human population shifts in Europe, Africa and Asia."

Source: Biotechnology and Biological Sciences Research Council
http://www.eurekalert.org/pub_releases/2007-02/babs-poo020507.php

Posted by
Robert Karl Stonjek
Paul Crowley - 08 Feb 2007 14:16 GMT
> Prehistoric origins of stomach ulcers uncovered
> An international team of scientists has discovered that the ubiquitous bacteria
> that causes most painful stomach ulcers has been present in the human
> digestive system since modern man migrated from Africa over 60,000 years ago.

The bacteria had probably been present in
the gut for a long time before that.

> The research, published online today (7 February) by the journal Nature, not
> only furthers our understanding of a disease causing bacteria but also offers
> a new way to study the migration and diversification of early humans.

Another interesting aspect is that it indicates
that friendly contact between hominid
populations was always minimal.

It strongly suggests that there was very little
friendly contact between H.sap and all other
hominids, not just during the migration and
expansion of H.sap, but between their ancestors
during the millions of years up to 60 kya.

If there had been such contact, then the varieties
of H.pylori among different hominids would have
intermingled,

Paul.
deowll - 09 Feb 2007 02:25 GMT
>> Prehistoric origins of stomach ulcers uncovered
>> An international team of scientists has discovered that the ubiquitous
[quoted text clipped - 25 lines]
> of H.pylori among different hominids would have
> intermingled,

Does it use sexual reproduction? Just asking.

> Paul.
Jois - 13 Feb 2007 15:23 GMT
>>> Prehistoric origins of stomach ulcers uncovered
>>> An international team of scientists has discovered that the ubiquitous
[quoted text clipped - 27 lines]
>>
> Does it use sexual reproduction? Just asking.

Standard asexual reproduction.
Jois
deowll - 15 Feb 2007 02:46 GMT
>>>> Prehistoric origins of stomach ulcers uncovered
>>>> An international team of scientists has discovered that the ubiquitous
[quoted text clipped - 30 lines]
> Standard asexual reproduction.
> Jois

Then I would expect one line or the other to take over.
Jois - 15 Feb 2007 04:06 GMT
>>>>> Prehistoric origins of stomach ulcers uncovered
>>>>> An international team of scientists has discovered that the ubiquitous
[quoted text clipped - 32 lines]
>
> Then I would expect one line or the other to take over.
Isn't that also what you'd expect with sexual reproduction just by chance?
mtDNA lines drop out of sight and some last names disappear over time.

Jois
deowll - 16 Feb 2007 02:45 GMT
>>>>>> Prehistoric origins of stomach ulcers uncovered
>>>>>> An international team of scientists has discovered that the
[quoted text clipped - 34 lines]
> Isn't that also what you'd expect with sexual reproduction just by chance?
> mtDNA lines drop out of sight and some last names disappear over time.

Wouldn't surprise me but the poster had said that the lack of mixing meant
no Asian genus Homo genes made it. The organism is asexual so no mixing
would be apt to occur and only one population would be expected to be
around.

Of course we already know some Asian genes made it. Not a big percentage but
some.

> Jois
Paul Crowley - 16 Feb 2007 12:19 GMT
>>>> Standard asexual reproduction.
>>>> Jois
[quoted text clipped - 6 lines]
> genes made it. The organism is asexual so no mixing would be apt to occur and only one
> population would be expected to be around.

I'm know nothing about the evolution of
bacteria, but I'd expect some intermingling
(somehow) of genes, if separate populations
of the same species came into contact.
I fully accept that I could be quite wrong.

The original report stated:
>|>|> They found that the genetic differences between human |>|> populations that arose as they
>dispersed from Eastern Africa |>|> over thousands of years are mirrored in H. pylori.

I'd bet that the same pattern is NOT reflected
in those human parasites that don't need close
contact between populations of the host species,
such as fleas, tapeworms, bed-bugs or bilharzia.
Our ancestors would have 'inherited' the local
bugs from the local population of hominids
when they moved in -- and vice versa.

Paul.
pete - 16 Feb 2007 22:31 GMT
In sci.anthropology.paleo, on Fri, 16 Feb 2007 12:19:43 -0000,
Paul Crowley <slkwuoiutiuytciuyik@slkjlskjoioue.com> sez:

>>>>> Standard asexual reproduction.
>>>>> Jois
>>>>
>>>> Then I would expect one line or the other to take over.

>>> Isn't that also what you'd expect with sexual reproduction just by
>>> chance? mtDNA lines drop out of sight and some last names disappear
>>> over time.

>> Wouldn't surprise me but the poster had said that the lack of mixing
>> meant no Asian genus Homo genes made it. The organism is asexual so no
>> mixing would be apt to occur and only one population would be expected
>> to be around.

>I'm know nothing about the evolution of
>bacteria, but I'd expect some intermingling
>(somehow) of genes, if separate populations
>of the same species came into contact.
>I fully accept that I could be quite wrong.

>The original report stated:
>>
|>|> They found that the genetic differences between human
|>|> populations that arose as they dispersed from Eastern Africa
|>|> over thousands of years are mirrored in H. pylori.

>I'd bet that the same pattern is NOT reflected
>in those human parasites that don't need close
[quoted text clipped - 3 lines]
>bugs from the local population of hominids
>when they moved in -- and vice versa.

http://en.wikipedia.org/wiki/Bacterial_conjugation

...says it's "rare" in bacteria.

However, note here:

http://www.pubmedcentral.nih.gov/botrender.fcgi?blobtype=html&artid=107256

Bingo.

Signature

==========================================================================
   vincent@triumf[munge].ca                            Pete Vincent
       Disclaimer: all I know I learned from reading Usenet.

John Wilkins - 17 Feb 2007 03:58 GMT
> In sci.anthropology.paleo, on Fri, 16 Feb 2007 12:19:43 -0000,
> Paul Crowley <slkwuoiutiuytciuyik@slkjlskjoioue.com> sez:
[quoted text clipped - 42 lines]
>
> Bingo.

Some refs

Feldgarden, Michael, Noah Byrd, and Frederick M. Cohan (2003), "Gradual
evolution in bacteria: evidence from Bacillus systematics", Microbiology
149 (12):3565-3573.

Werren, J. H., and J. D. Bartos (2001), "Recombination in Wolbachia",
Curr Biol 11 (6):431-435.

Koonin, E. V., K. S. Makarova, and L. Aravind (2001), "Horizontal gene
transfer in prokaryotes: quantification and classification", Annu Rev
Microbiol 55:709-742.

Lawrence, Jeffrey G. (2001), "Catalyzing Bacterial Speciation:
Correlating Lateral Transfer with Genetic Headroom", Sys t. Biol. 50
(4):479-496.

Signature

John S. Wilkins, Postdoctoral Research Fellow, Biohumanities Project
University of Queensland - Blog: scienceblogs.com/evolvingthoughts
"He used... sarcasm. He knew all the tricks, dramatic irony, metaphor,
bathos, puns, parody, litotes and... satire. He was vicious."

deowll - 18 Feb 2007 02:29 GMT
> In sci.anthropology.paleo, on Fri, 16 Feb 2007 12:19:43 -0000,
> Paul Crowley <slkwuoiutiuytciuyik@slkjlskjoioue.com> sez:
[quoted text clipped - 44 lines]
>
> --

I asked if these strains used sexual reproduction and got no.  Conjugation
is the norm among microbes that use sexual reproduction or at least it was
back when I took biology in college. If these microbes use conjugation the
answer should have been yes.

Other methods for moving around DNA do exist but... Don't count on them. It
is pretty hit or miss. Something might get moved right away or not. Viruses
do move material. Consumption does move material  and the article suggests
that free DNA may be taken in. In any event according to the article DNA
exchange could have occurred because it has been demonstrated under lab
conditions. No evidence for such exchange has been reported in this
instance.

> ==========================================================================
>    vincent@triumf[munge].ca                            Pete Vincent
>        Disclaimer: all I know I learned from reading Usenet.
nickname - 14 Feb 2007 22:04 GMT
"This showed that it migrated from Eastern Africa at almost exactly
the same time as early humans, approximately 60,000 years ago. "

No, it shows that it migrated TO Eastern Africa...."".

If it had migrated from Eastern Africa, then it would have been in the
African ancestral population earlier. Since it wasn't found in Norht,
West, South Africans of earlier pops. it must have arrived there and
then spread. Most likely due to Mt Toba 73.5ka moving people around.
 
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